The U.S. is too closely allied with a repressive regime and one which we should have severed ties to a long time ago. He may be a draconian but he is one of our hoi triakonta, Thirty Tyrants, seems to be the thinking in Washington.
Musharraf's inability to rein in the Pakistani Taleban is part and parcel of his danger of being swarmed by a deep structural crisis at the heart of Pakistan.
The flaw is an over reliance on the army to sustain the constitution, the independence of the judiciary, the bureaucracy, a collapsing economy, and the dichotomy between army elites, the political parties, and civil society.
I've advocated that a greater regional stability is to be found in the combined efforts of India, Russia, and China. It is, after all, in their background that the Taleban is rising and it is their issue more immediately than it is of concern to the U.S. India's traditional hostility may be offset by the Russians and the Chinese.